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cryoJAX

Welcome to cryoJAX!
Examples
Examples
- Introductory
  Introductory
- Intermediate
  Intermediate
API
API
- cryojax.simulator
  cryojax.simulator
  - Representing volumes
    Representing volumes
    
    Scattering potential representations
    
    Representing poses
    
    Structural ensembles
  - Image formation
    Image formation
    
    Scattering potential integration methods
    
    Contrast transfer functions
    
    Scattering approximations
  - Putting it all together
    Putting it all together
    
    Configuring an image
    
    Rendering an image
- cryojax.inference
  cryojax.inference
  - cryojax.inference.distributions
    cryojax.inference.distributions
    
    Distributions: noisy images and likelihoods
  - Grid search interface
- cryojax.data
  cryojax.data
  - RELION compatibility
- cryojax.io
  cryojax.io
  - Reading and writing MRC files
  - Reading atomic structures
- cryojax.image
  cryojax.image
  - Utility functions for image and volume arrays
  - cryojax.image.operators
    cryojax.image.operators
    
    Filters and masks
- cryojax.coordinates
  cryojax.coordinates
  - Creating coordinate systems
  - Transforming coordinate systems
- cryojax.rotations
  cryojax.rotations
  - Representing rotations
  - Helpers for converting angular parameterizations
- cryojax.constants
  cryojax.constants
  - Working with physical units
  - Scattering factor parameters
- cryojax.utils
  cryojax.utils

Representing rotations¤